Species DNA Detection Using PGR Gene Genetic Markers in Chicken Nuggets
Species DNA Detection Using PGR Gene Genetic Markers in Chicken Nuggets
DOI:
https://doi.org/10.22437/ifstj.v5i1.14618Keywords:
Chicken, DNA, Nugget, PCRAbstract
Species DNA detection using genetic markers of the PGR gene on chicken nuggets was carried out to see whether these genetic markers could be used to test species DNA detection in chicken nuggets food products. The test method used in this study is a real-time PCR test method using the SYBR green technique where the test results can be either Ct or Tm values ​​which indicate amplification or detection. The results of DNA isolation showed that the concentration and purity of the isolated DNA were in the range of 35.10 ng/µL – 36.10ng/µL with an average of 35,488 ng/µL. As for the purity value measured at the A260/A280 wavelength, the results were obtained with a purity range between 2,110 – 2,250 with an average of 2,165. For the results of real-time PCR amplification, the Ct value of the chest sample was at 24.50, the Ct LOD value was at 21.20 and the Ct value of the positive control was 27.10. For the Tm value of the busty sample at 81.10, the Tm LOD value at 81.20 and the positive control Tm value at 82.10. In a conclusion, in this study, genetic markers of the PGR gene can be used to test specific DNA detection of chicken species in chicken nugget products.
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Hebert, P.D.N.; Cywinska, A.; Ball, S.L. & deWaard, J.R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society of London-Series B: Biol. Sci., 270: 313- 322.
F. C. Yap, Y. J. Yan, K. T. Loon, J. L. N. Zhen, N. W. Kamau, and J. V. Kumaran, “Phylogenetic Analysis of Different Breeds of Domestic Chickens in Selected Area of Peninsular Malaysia Inferred from Partial CytochromebGene Information and RAPD Markers,†Animal Biotechnology, vol. 21, no. 4, pp. 226–240, Oct. 2010.
H. A. Yacoub, M. M. Fathi, and M. A. Sadek, “Using cytochromebgene of mtDNA as a DNA barcoding marker in chicken strains,†Mitochondrial DNA, vol. 26, no. 2, pp. 217–223, Sep. 2015.
Peng, W. et al., 2019. Molecular identification of the Danzhou chicken breed in China using DNA barcoding. Mitochondrial DNA Part B, 4(2), pp.2459–2463.
E. P. Sari, L. R. Kartikasari, and M. Cahyadi, “Detection of chicken contamination in beef meatball using duplex-PCR Cyt b gene,†IOP Conference Series: Materials Science and Engineering, vol. 193, p. 012010, Apr. 2017.
H. A. Yacoub, M. M. Fathi, and W. M. Mahmoud, “DNA barcode through cytochromebgene information of mtDNA in native chicken strains,†Mitochondrial DNA, vol. 24, no. 5, pp. 528–537, Mar. 2013.
H. A. Yacoub and M. M. Fathi, “Phylogenetic analysis using d-loop marker of mtDNA of Saudi native chicken strains,†Mitochondrial DNA, vol. 24, no. 5, pp. 538–551, Mar. 2013.
Bottje, W., Kong, BW, Reverter, A., Waardenberg, AJ, Lassiter, K., & Hudson, NJ. “Progesterone signaling in broiler skeletal muscle is associated with different feed efficienciesâ€. Biologi sistem BMC , 11 (1), 29. 2017.
A. Sophian, R. Purwaningsih, E. P. J. Igirisa, M. L. AmirullahH, B. L. Lukita, and R. A. Fitri, “Short Communication: Detection of Salmonella typhimurium ATCC 14028 and Listeria monocytogenes ATCC 7644 in processed meat products using Real-Time PCR Multiplex Method,†Asian Journal of Natural Product Biochemistry, vol. 19, no. 1, Mar. 2021.
A. Abinawanto, A. Sophian, R. Lestari, A. Bowolaksono, P. S. Efendi, and R. Afnan, “Analysis of IGF-1 gene in ayam ketawa (Gallus gallus domesticus) with dangdut and slow type vocal characteristics,†Biodiversitas Journal of Biological Diversity, vol. 20, no. 7, Jul. 2019.
A. Sophian, “Short Communication: Analysis of purity and concentration of extracted DNA on salted fish processed food products,†Asian Journal of Natural Product Biochemistry, vol. 19, no. 1, Mar. 2021.
A. Sophian, “Analysis of the Results of DNA Isolation from Chicken Feather Sampled from the Base of the Young Feathers, the base of the Old Feathers and the Ends of the Feathersâ€, BES, vol. 5, no. 2, Aug. 2021.
Qiagen. 2020. DNeasy® mericon® Food Handbook. For extraction of total nucleic acids from a range of food sample types. www.qiagen.com/shop. Technical Support support.qiagen.com. Website www.qiagen.com.
Cai, H., Gu, X., Scanlan, M.S., Ramatlapeng D.H. and Lively, C.R. “Real-time PCR assays for detection and quantitation of porcine and bovine DNA in gelatin mixtures and gelatin capsules. Journal of Food Composition and Analysis†25: 83–87. 2012
WHO. 2016. Establishment of PCR laboratory in developing countries, 2nd edition. 1-96. WHO Library Cataloguing-in-Publication data. ISBN 978-92-9022-531-7.
A. Sophian, R. Purwaningsih, B. L. Lukita, and E. C. Ningsih, “Detection of Salmonella typhimurium ATCC 14028 in supplement health product liquid preparation using Real-Time PCR (qPCR),†Biofarmasi Journal of Natural Product Biochemistry, vol. 18, no. 2, Jul. 2020.
A. Sophian, R. Purwaningsih, M. Muindar, E. P. J. Igirisa, and M. L. Amirullah, “Detection of Salmonella typhimurium ATCC 14028 in Powder Prepared Traditional Medicines Using Real-Time PCRâ€, bjop, vol. 4, no. 3, pp. 178-183, Aug. 2021.
Piknova L, Kaclikova L, Pangallo D, Polek B, Kuchta T. “Quantification of Salmonella by 5’-nuclease real-time polymerase chain reaction targeted to fimC geneâ€. Curr Microbiol 50: 38-42. 2005.
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